TKBG Publications

2012

María Pérez-Catalán, Rafael Berlanga, Ismael Sanz, María José Aramburu. A semantic approach for the requirement-driven discovery of web resources in the Life Sciences. Knowledge and Information Systems, DOI 10.1007/s10115-012-0498-5

doi:10.1186/1471-2105-13-S1-S6

Rafael Berlanga, Victoria Nebot. XML Mining for Semantic Web. In XML Data Mining: Models, Methods, and Applications. IGI Global, 2012. 317-342. doi:10.4018/978-1-61350-356-0.ch014
Victoria Nebot, Rafael Berlanga: Building Data Warehouses with Semantic Web Data. Decision Support Systems (accepted).
Victoria Nebot, Rafael Berlanga: Finding association rules in semantic web data. Knowledge-Based Systems 25(1): 51-62 (2012)
Rafael Berlanga, Oscar Romero, Alkis Simitsis, Victoria Nebot, Torben Bach Pedersen, Alberto Abelló and María José Aramburu. Semantic Web Technologies for Business Intelligence. In Business Intelligence Applications and the Web: Models, Systems and Technologies. IGI Global, 2012. 310-339. doi:10.4018/978-1-61350-038-5.ch014

2011

E. Jimenez-Ruiz, B. Cuenca Grau, R. Berlanga, I. Horrocks. "Logic-based Assessment of the Compatibility of UMLS Ontology Sources". In BMC Journal of Biomedical Semantics 2011, 2(Suppl 1):S2, ISSN 1613-0073. 2010. [More info].
Z. Falomir, E. Jiménez-Ruiz, M. T. Escrig, L. Museros. "Describing Images using Qualitative Models and Description Logics”. In Spatial Cognition & Computation Journal, Volume 11, Issue 1, 2011, ISSN: 1387-5868. [More info].
Victoria Nebot, Rafael Berlanga. Semantics-aware Open Information Extraction in the biomedical domain. In Semantic Web Applications and Tools for Life Sciences Workshop (SWAT4LS). London, 2011.
Victoria Nebot, Shahad Kudama, Rafael Berlanga. Towards the discovery of semantic relations in large biomedical annotated corpora. 22nd International Workshop on Database and Expert Systems Applications (DEXA 2011). Toulouse (France), 2011 IEEE Computer Society. ISBN: 978-0-7695-4486-1.
Shahad Kudama, Rafael Berlanga, Lisette García, Victoria Nebot, María José Aramburu. Towards tailored semantic annotation systems from Wikipedia. 22nd International Workshop on Database and Expert Systems Applications (DEXA 2011). Toulouse (France), 2011 IEEE Computer Society. ISBN: 978-0-7695-4486-1.
Victoria Nebot, Min Ye, Mario Albrecht, Jae-Hong Eom, Gerhard Weikum: DIDO: a disease-determinants ontology from web sources . WWW (Companion Volume) 2011: 237-240

2010

E. Jiménez-Ruiz, B. Cuenca Grau, I. Horrocks, R. Berlanga. "Supporting Concurrent Ontology Development: Framework, Algorithms and Tool”. Data & Knowledge Engineering Journal, ISSN: 0169-023X, Volume 70, Issue 1, pp. 146-164, 2011. [More info]
María Pérez, Ismael Sanz and Rafael Berlanga: XTaGe, a flexible XML collection generator. Demo in SIGMOD 2010
María Pérez, Ismael Sanz, Rafael Berlanga, María José Aramburu. Semi-automatic discovery of web services driven by user requirements. In DEXA 2010, LNCS 6261.
María Pérez, Ismael Sanz, Rafael Berlanga: A biclustering-based technique for requirement-driven Web Service selection. In JISBD 2010.
R. Berlanga, E. Jiménez-Ruiz, V. Nebot and I. Sanz. FAETON: Form Analysis and Extraction Tool for ONtology construction. In International Journal of Computer Applications in Technology (IJCAT), Volume 39, Issue 4, pp. 224-233, ISSN 0952-8091, 2010. [doi ref]. This is an extended version of a workshop paper presented in the XIII Spanish Conference on Software Engineering and Databases, October 2008.
R. Berlanga, V. Nebot and E Jiménez-Ruiz. Semantic annotation of biomedical texts through concept retrieval. Procesamiento del Lenguage Natural. ISSN 1989-7553. Volume Num. 45. pp. 247-250. 2010.
E. Jimenez-Ruiz, B. Cuenca Grau, R. Berlanga, D. Rebholz-Schuhmann. "First steps in the logic-based assessment of post-composed phenotypic descriptions". Proceedings of the 3rd International Workshop on Semantic Web Applications and Tools for Life Sciences (SWAT4LS2010). Berlin, Germany, Devember 2010. Volume 698 of CEUR WS Proceedings, ISSN 1613-0073.
R. Berlanga, E. Jimenez-Ruiz, V. Nebot. "Building conceptual spaces for exploring and linking biomedical resources". Proceedings of the 3rd International Workshop on Semantic Web Applications and Tools for Life Sciences (SWAT4LS2010). Berlin, Germany, Devember 2010. Volume 698 of CEUR WS Proceedings, ISSN 1613-0073.
Victoria Nebot, Rafael Berlanga Llavori: Mining Association Rules from Semantic Web Data. IEA/AIE (2) 2010: 504-513
Nebot, V. and Berlanga, R. Building data warehouses with semantic data: In Proceedings of the 2010 EDBT/ICDT Workshops (Lausanne, Switzerland, March 22 - 26, 2010). EDBT '10, vol. 426. ACM, New York, NY, 1-8. DOI= http://doi.acm.org/10.1145/1754239.1754250

2009

Nebot, V., Berlanga, R., Pérez, J.M., Aramburu, M.J. and Pedersen, T.B.: Multidimensional Integrated Ontologies: A Framework for Designing Semantic Data Warehouses. Special Issue of Journal on Data Semantics (JoDS XIII), 5530:1--35, 2009.
Nebot, V. and Berlanga, R.: Building Tailored Ontologies from Very Large Knowledge Resources. In ICEIS 2009 - Proceedings of the 11th International Conference on Enterprise Information Systems, Volume AIDSS, Milan, Italy, May 6-10, 2009: 144-151
Nebot, V. and Berlanga, R.: Populating Data Warehouses with Semantic Data. In the 14th edition of the Spanish Conference on Software Engineering and Databases (JISBD 2009), San Sebastian, Spain, September 2009: 303-314
Nebot, V. and Berlanga, R.: Efficient retrieval of ontology fragments using an interval labeling scheme. Inf. Sci. 179(24): 4151-4173 (2009)
M. Mesiti, E. Jiménez-Ruiz, I. Sanz, R. Berlanga-Llavori, P. Perlasca, G. Valentini and D. Manset. "XML-based approaches for the integration of heterogeneous bio-molecular data". Special Issue on Bioinformatics Methods for Biomedical Complex Systems Applications. BMC Bioinformatics 2009, 10(Suppl 12):S7, ISSN 1471-2105, doi:10.1186/1471-2105-10-S12-S7. October 2009.
María Pérez, Ismael Sanz and Rafael Berlanga. XTaGe: A flexible generation system for complex XML collections. DEXA 2009. LNCS 5690.
Sanz, I.y E. Jiménez-Ruiz: Ontologías en Informática, en Alcina, A., E. Valero y E. Rambla (eds.): Terminología y Sociedad del conocimiento, Peter Lang, Berna, 255-286. ISBN: 978-3-03911-593-8.
E. Jimenez-Ruiz, B. Cuenca Grau, I. Horrocks, R. Berlanga. "Ontology Integration Using Mappings: Towards Getting the Right Logical Consequences." In the 6th European Semantic Web Conference (ESWC 2009), Crete, Greece, June 2009. LNCS 5554, ISBN 978-3-642-02120-6, pp. 173-187. [doi ref]
A. Jimeno Yepes, R. Berlanga-Llavori, D. Rebholz-Schuhmann, Exploitation of ontological resources for scientific literature analysis: searching genes and related diseases, 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2009
A. Jimeno-Yepes, E. Jimenez-Ruiz, R. Berlanga-Llavori, D. Rebholz-Schuhmann. "Reuse of terminological resources for efficient ontological engineering in Life Sciences". Special Issue on Semantic Web Applications and Tools for Life Sciences. BMC Bioinformatics 2009, 10(Suppl 10):S4, ISSN 1471-2105, doi:10.1186/1471-2105-10-S10-S4. October 2009.
A. Jimeno Yepes, R. Berlanga-Llavori, D. Rebholz-Schuhmann, Topic template queries to enhance document retrieval, ECIR workshop on Contextual Information Access, Seeking and Retrieval Evaluation, 2009
A. Jimeno Yepes, R. Berlanga-Llavori, D. Rebholz-Schuhmann, Ontology refinement for improved information retrieval, Information Processing & Management: Special Issue on Semantic Annotations in Information Retrieval, 2009 (to appear)
A. Jimeno Yepes, R. Berlanga-Llavori, D. Rebholz-Schuhmann, Terminological cleansing for improved retrieval based on ontological terms, WSDM workshop on Exploiting Semantic Annotations in Information Retrieval, 2009
E. Jimenez-Ruiz, B. Cuenca Grau, I. Horrocks, R. Berlanga. "Building Ontologies Collaboratively using ContentCVS". Proceedings of the 22nd International Workshop on Description Logics (DL2009). Oxford, UK, July 2009. Volume 477 of CEUR WS Proceedings, ISSN 1613-0073.
E. Jimenez-Ruiz, B. Cuenca Grau, R. Berlanga, I. Horrocks. "Towards a Logic-based Assessment of the compatibility of UMLS sources". Proceedings of the 2nd International Workshop on Semantic Web Applications and Tools for Life Sciences (SWAT4LS2009). Amsterdam, The Netherlands, November 2009. Volume 559 of CEUR WS Proceedings, ISSN 1613-0073.
E. Jimenez-Ruiz, B. Cuenca Grau, I. Horrocks, R. Berlanga. "ContentCVS: A CVS-based Collaborative ONTology ENgineering Tool (Demo)". Proceedings of the 2nd International Workshop on Semantic Web Applications and Tools for Life Sciences (SWAT4LS2009). Amsterdam, The Netherlands, November 2009. Volume 559 of CEUR WS Proceedings, ISSN 1613-0073.
A. Duque, C. Campos, E. Jiménez-Ruiz and R. Chalmeta ." An Ontological Solution to Support Interoperability in the Textile Industry". Proc. of the Second IFIP WG 5.8 International Workshop, IWEI 2009, Valencia, Spain, October 13-14, 2009. LNBIP 38. Enterprise Interoperability. ISBN 978-3-642-04749-7, pp. 38-51 .[doi ref]
Z. Falomir Llansola, E. Jiménez-Ruiz, L. Museros Cabedo, M.T. Escrig Monferrer. "An Ontology for Qualitative Description fo Images". COSIT 2009 Workshop proceedings, Spatial and Temporal Reasoning for Ambient Intelligence Systems. Aber Wrac'h (France). September 2009.

2008

Ismael Sanz, Marco Mesiti, Giovanna Guerrini and Rafael Berlanga: Fragment-based Approximate Retrieval in Highly Heterogeneous XML Collections. Data & Knowledge Engineering 64(2008), 266-293. doi:10.1016/j.datak.2007.05.008
E. Jimenez-Ruiz, B. Cuenca-Grau, U. Sattler, T. Schneider and R. Berlanga. "Safe and Economic Re-Use of Ontologies: A Logic-Based Methodology and Tool Support". Proc. of the European Semantic Web Conference (ESWC 2008), Tenerife, Spain, June 2008. LNCS 5021, ISBN: 978-3-540-68233-2
E. Jimenez-Ruiz, B. Cuenca-Grau, U. Sattler, T. Schneider and R. Berlanga. "Safe and Economic Re-Use of Ontologies: A Logic-Based Methodology and Tool Support". In: Proc. of 21st International Workshop on Description Logics (DL 2008). Dresden, Germany, May 13–16, 2008. Volume 353 of CEUR WS Proceedings, ISSN 1613-0073.
E. Jimenez-Ruiz, B. Cuenca-Grau, U. Sattler, T. Schneider and R. Berlanga. "ProSÉ: A Protégé Plugin for Reusing Ontologies: Safe and Économique". Accepted as a demo paper in the Spanish Conference on Databases and Software Engineering, JISBD 2008.
R. Berlanga, E. Jimenez-Ruiz, V. Nebot, D. Manset, A. Branson, T. Hauer, R. McClatchey, D. Rogulin, J. Shamdasani, S. Zillner and J. Freund. "Medical Data Integration and the Semantic Annotation of Medical Protocols". 21th IEEE International Symposium on Computer-Based Medical Systems (CBMS 2008), Jyväskylä, Finland, 2008.
Marco Mesiti, Ernesto Jiménez-Ruiz, Ismael Sanz, Rafael Berlanga, Giorgio Valentini, Paolo Perlasca and David Manset. XML-based approaches for the integration of heterogeneous Bio-molecular data. Accepted in the Network Tools and Applications in Biology Workshop, NETTAB 2008 Workshop on Bioinformatics Methods for Biomedical Complex System Applications
Ismael Sanz, Marco Mesiti, Giovanna Guerrini, Rafael Berlanga. An Entropy-based Characterization of the Heterogeneity of XML Collections. Accepted in the 3rd International Workshop on XML Data Management Tools and Techniques (XANTEC 2008).
Ismael Sanz, Marco Mesiti, Rafael Berlanga and Giovanna Guerrini: ArHeX: A Framework for Approximate Retrieval in Heterogeneous XML Collections (extended abstract). Accepted for publication in SEBD 2008, Sixteenth Italian Symposium on Advanced Database Systems.
Ismael Sanz, María Pérez, and Rafael Berlanga. Designing similarity measures for XML. Demo accepted for publication in 27th International Conference on Conceptual Modeling (ER 2008). LNCS 5231 (in press).
Ismael Sanz, María Pérez, and Rafael Berlanga. Measure selection in multi-similarity XML applications. Accepted in the Third International Workshop on Flexible Database and Information System Technology (FlexDBIST-08).
Rafael Berlanga, Ernesto Jiménez-Ruiz, Victoria Nebot, and Ismael Sanz: FAETON: Form Analysis and Extraction Tool for ONtology construction. Accepted for publication in ZOCO 2008.
Ismael Sanz, Ernesto Jiménez-Ruíz. Ontologías en Informática. Chapter in Amparo Alcina (ed.) "Terminología y sociedad del Conocimiento". Publicacions de la Universitat Jaume I, in press.
Marco Mesiti, Ernesto Jimenez-Ruiz, Ismael Sanz, Rafael Berlanga, Giorgio Valentini, Paolo Perlasca and David Manset. Data Integration Issues and Opportunities in Biological XML Data Management. Chapter in Eric Pardede (ed.) "Open and Novel Issues in XML Database Applications: Future Directions and Advanced Technologies." IGI Global, in press.
Rafael Berlanga-Llavori, Henry Anaya-Sánchez, Aurora Pons-Porrata, Ernesto Jiménez-Ruiz. Conceptual Subtopic Identification in the Medical Domain. Accepted for publication in The 11th Ibero-American Conference on Artificial Intelligence (IBERAMIA 2008). LNAI proceedings.
A. Jimeno Yepes, E. Jimenez-Ruiz, R. Berlanga-Llavori, D. Rebholz-Schuhmann, Use of shared lexical resources for efficient ontological engineering, Semantic Web Applications and Tools for Life Sciences, 2008.

2007

A. Jimeno-Yepes, E. Jimenez-Ruiz, V. Lee, S. Gaudan, R.Berlanga, D. Rebholz-Schuhmann: Assessment of diseases named entity recognition on a corpus of annotated sentences. Accepted in International Symposium on Languages in Biology and Medicine (LBM), December 2007. Selected for publication in BMC Bioinformatics 2008, 9(Suppl 3):S3, doi:10.1186/1471-2105-9-S3-S3.
Ernesto Jiménez-Ruiz, Rafael Berlanga, Victoria Nebot, Ismael Sanz: OntoPath: A Language for Retrieving Ontology Fragments. In Robert Meersman and Zahir Tari editors, Proceedings of On the Move to Meaningful Internet Systems 2007: CoopIS, DOA, ODBASE, GADA, and IS, Springer, Heidelberg}, pp. 897—914, LNCS 4803, ISBN 978-3-540-76846-3, 2007
Henry Anaya, Rafael Berlanga, Aurora Pons: Retrieval of Relevant Concepts from a Text Collection. Accepted for publication in CAEPIA 2007 (November 2007)
Ismael Sanz, Rafael Berlanga, Marco Mesiti and Giovanna Guerrini: Flexible Composition of Indexes and Similarity Measures in XML. First International Workshop on Ranking in Databases, DBRank 2007.
Ernesto Jiménez-Ruiz, Victoria Nebot, Rafael Berlanga, Ismael Sanz and Alfonso Rios: A Protege Plug-in-based System to Manage and Query large Domain Ontologies. 10th International Protégé Conference, July 15-18, 2007, Budapest, Hungary.
Carlos Granell, Dolores María Llidó, Rafael Berlanga, Michael Gould. An Ontology-Driven Architecture for re-using Semantic Web Services. In On the Move to Meaningful Internet Systems 2007: OTM 2007 Workshops (SWWS 2007). Vilamoura (Portugal), November 2007. Springer (Berlín, 2007), LNCS 4806, pp. 1215-1221.
Carlos Granell Canut, Michael Gould Carlson, Dolores María Llidó Escriva, Rafael Berlanga Llavori. A Model-Driven Approach for Reusing Service Compositions. EATIS'07. Faro, Portugal: 14-05-2007. Internacional. 2007 Universidade do Algarve. ISBN: 978-1-59593-598-4.

2006

E. Jimenez-Ruiz, R. Berlanga, I. Sanz, R. McClatchey, R. Danger, D. Manset, J. Paraire, A. Rios: The Management and Integration of Biomedical Knowledge: Application in the Health-e-Child Project (Position Paper). In OnToContent'06, 1st International Workshop on Ontology content and evaluation in Enterprise. LNCS Num. 4278. pp. 1062-1067. October 2006.
Ernesto Jiménez, Rafael Berlanga, Ismael Sanz, and Roxana Danger: A Methodology for Vertical Integration over Biomedical Knowledge. In JIDBD'06, XI Spanish Conference on Software Engineering and Databases, October 2006.
E. Jiménez-Ruiz, R. Berlanga. A View-based Methodology for Collaborative Ontology Engineering: an Approach for Complex Applications (VIMethCOE). In 1st International Workshop (WETICE workshop) on Semantic Technologies in Collaborative Applications (STICA), June 2006. Selected "best workshop paper" based on reviews.
Ismael Sanz, Marco Mesiti, Giovanna Guerrini and Rafael Berlanga. Highly Heterogeneous XML Collections: How to retrieve precise results?. In 7th Intl. Conf. on Flexible Query answering Systems (FQAS 2006). LNAI 4027. DOI 10.1007/11766254
Ismael Sanz, Marco Mesiti, Giovanna Guerrini and Rafael Berlanga. ArHeX: An Approximate Retrieval System for Highly Heterogeneous XML Document Collections. Demo in 10th International Conference on Extending Database Technology, EDBT 2006. LNCS 3896. [Poster]
Giovanna Guerrini, Marco Mesiti and Ismael Sanz. An Overview of Similarity Measures for Clustering XML Documents. Chapter in Athena Vakali and George Pallis (eds.): Web Data Management Practices: Emerging Techniques and Technologies. ISBN 1-59904-228-2. Idea Group, September 2006.

2005

E. Jiménez, R. Berlanga, I. Sanz, M. J. Aramburu, R. Danger: OntoPathView: A Simple View Definition Language for the Collaborative Development of Ontologies. In B. López et al. (Eds.): Artificial Intelligence Research and Development, pages 429-436. IOS Press, 2005. ISBN 1-58603-560-6
I. Sanz, M. Mesiti, G. Guerrini, R. Berlanga: Approximate Subtree Identification in Heterogeneous XML Documents Collections. In Third International XML Database Symposium - XSym 2005. LNCS 3671.
J. Paraire, R. Berlanga, D. Llidó: Resolution of semantic queries on a set of Web Services. In 16th International Conference on Database and Expert Systems Applications - DEXA 2005. LNCS 3588.
I. Navas-Delgado, I. Sanz, J. F. Aldana-Montes, R. Berlanga: Automatic Generation of Semantic Fields for Resource Discovery in the Semantic Web. In 16th International Conference on Database and Expert Systems Applications - DEXA 2005. LNCS 3588.
J. M. Pérez, T. B. Pedersen, R. Berlanga, M. J. Aramburu: IR and OLAP in XML Document Warehouses. In European Conference on Information Retrieval (ECIR 2005). Lecture Notes in Computer Science 3408, pages 536-539. Ed. Springer-Verlag.
Juan Manuel Pérez Martínez, Rafael Berlanga Llavori, María José Aramburu Cabo, Torben Bach Pedersen. A Relevance-Extended Multi-dimensional Model for a Data Warehouse Contextualized with Documents. Eighth ACM International Workshop on Data Warehousing and OLAP (DOLAP'05). Bremen (Germany): 04-11-2005. Internacional. 2005 ACM Press. ISBN: 1-59593-162-7.
R. Berlanga, M. J. Aramburu, D. M. Llidó, I. Sanz, J. M. Pérez, R. Danger, J. Paraire, E. Jiménez: CRISOL Generacion automatica de instancias ontologicas desde fuentes de datos semi-estructuradas. Jornada de Seguimiento de Proyectos del Plan Nacional de I+D. JITEL 2005, pp. 225-226. ISBN:84-8408-346-2

2004

R. Danger, I. Sanz, R. Berlanga, J. Ruíz-Shulcloper A proposal for the automatic generation of instances from unstructured text. CIARP 2004, Lecture Notes in Computer Science 3287, pages 462-469, Ed. Springer-Verlag.
A. Pons, R. Berlanga, J. Ruíz-Shulcloper, J. M. Pérez: Jerartop: A new Topic Detection System. In CIARP 2004, Lecture Notes in Computer Science 3287, pages 446-453, Ed. Springer-Verlag.
R. Danger, R. Berlanga, J. Ruíz-Shulcloper: CRISOL: An approach for automatically populating a Semantic Web from Unstructured Text Collections. Database and Expert Systems, Lecture Notes in Computer Science 3180, pages 243-253, Ed. Springer-Verlag.
J.M. Pérez, R. Berlanga, M.J. Aramburu: A Document Model based on Relevance Modelling Techniques for Semi-Structured Information Warehouses. Database and Expert Systems, Lecture Notes in Computer Science 3180, pages 318-327, Ed. Springer-Verlag.
R. Danger, J. Ruiz-Shulcloper, R. Berlanga: Text Mining using the hierarchical syntactical structure of documents. In Current Topics in Artificial Intelligence, Lecture Notes in Artificial Intelligence 3040, pp. 556-565, Ed. Springer-Verlag.
R. Danger, J. Ruíz-Shulcloper, R. Berlanga: ObjectMiner: A New Approach for Mining Complex Objects. ICEIS 2004, pp. 42-47, Oporto. (972-8865-00-7)
J.M. Pérez, R. Berlanga, M.J. Aramburu: Semi-structured information warehouses: an approach to a document model to support their construction. ICEIS 2004, pp. 579-582, Porto. (972-8865-00-7)[pdf]
I. Sanz, R. Berlanga: Self-Organizing P2P Data-Sharing Networks Using Representative-Based Clustering. In IX Jornadas de Ingeniería del Software y Bases de Datos - JISBD 2004.
R. Berlanga, A. Scheppler, M. J. Aramburu, I. Sanz, R. Danger : OntoPath: A Query Language for Ontologies. In IX Jornadas de Ingeniería del Software y Bases de Datos" JISBD 2004.
E. Jiménez, R. Marín, P. J. Sanz. A Soft Computing Classifier Based On Fourier Descriptors Within Online Robots Context. International Conference On Systems, Man And Cybernetics, IEEE SMC 2004. The Hague, The Netherlands, October 2004. ISBN 0-7803-8567-5, pp. 4838-4843

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