UMLSAssessment (preliminary results 2009-2010)

Refer to LogMap website for up-to-date-results

LogMap: Logic-based Methods for Ontology Mapping (http://www.cs.ox.ac.uk/isg/projects/LogMap/index.html)

Logic-based Assessment of the compatibility of UMLS ontology sources

Paper accepted for publication in BMC Journal of Biomedical Semantics (http://www.jbiomedsem.com/)

Towards a Logic-based Assessment of the compatibility of UMLS sources

Preliminary paper presented in the 2nd International Workshop on Semantic Web Applications and Tools for Life Sciences (SWAT4LS2009). Amsterdam, The Netherlands, November 2009. Volume 559 of CEUR WS Proceedings

UMLS Mappings

Original set of mappings between FMA, NCI and SNOMED CT (plain format)

Revised set of UMLS mappings

Revised mappings between FMA, NCI and SNOMED CT. OWL 2 format.

UMLS MRCONSO Scripts

Scripts to process UMLS MRCONSO.RRF

FMA ontology (OWL)

FMA version and respective locality-based modules relevant for the integration with NCI and SNOMED.

NCI ontology (OWL)

NCI version and respective locality-based modules relevant for the integration with FMA and SNOMED.

SNOMED CT ontology (OWL)

SNOMED locality-based modules relevant for the integration with NCI and FMA.

Java source files

Implementation of the logic-based principles. The Java codes depend on the HermiT reasoner (http://hermit-reasoner.com/) and the locality module extractor for OWL API 3 (http://krono.act.uji.es/people/Ernesto/safety-ontology-reuse/locality-module-extractor)

Results FMA-NCI

Result files after applying principles over FMA and NCI

Results FMA-SNOMED

Result files after applying principles over FMA and SNOMED

Results SNOMED-NCI

Result files after applying principles over SNOMED and NCI