Retrieve amino acid sequences, functional domain assignments and classification of gene products containing protein kinase domainsPredict specificity-determining residues in protein families Search for information on protein domain familyDetect structural and functional domains in protein sequencesIdentify conserved domain in a protein sequence.Identify putative SH3 domain interaction sites on protein sequences.Use this tool to identify and annotate protein domains.Find information about protein domains in protein function, interaction and evolution.Automatically identify protein structural domains given the three-dimensional coordinates of a protein.Identify homologous protein domain sequences.Search and analyze protein domain families.Identify protein families and domains for a given protein sequence_proteins>Database of known and predicted protein domain interactions.Find
domains for protein structures._proteins>Predict subcellular localization of proteins in various organisms.Search and predict sub-cellular localization for eukaryotic proteins of known three-dimensional
(3D three dimensional) tertiary structure.Search for data describing the membrane organization and subcellular localization of mouse and human proteins.Find information about human and arabidopsis protein locationsSearch for information on nuclear localization signals (NLSs) and nuclear proteins. ?????Predict bacterial protein subcellular localizations.Predict the presence of nuclear localization signal in a protein sequence.Predict the subcellular localization of a protein sequencePredict the subcellular localization sites of proteins based on their amino acid sequences.
Sequence similarity search to a nucleotide sequence from various databases.
Compare your query sequence to DNA sequence or protein products of Caenorhabditis elegans or Caenorhabditis briggsae
Blast your sequence against zebrafish specific sequences.
Perform protein sequence similarity with the translated query in a PROTEIN database
Conduct sequence similarity searching against complete proteome or genome databases using the Fasta programs.
Perform protein sequence similarity with a query sequence from the Genbank nucleotide databases
Search for similarities between proteins by simultaneous matching of multiple
domains.
Identify distant homologous protein sequences.
Perform sequence similarity to a query protein sequence from SWISS-PROT using an exhaustive true Smith and Waterman algorithm.
Perform sequence similarity to a query sequence from various sequence databases.
Perform automated and sensitive protein sequence similarity search.
Search for similarities between proteins by simultaneous matching of multiple
domains.
finds regions of local protein sequence similarity
sequence similarity searching against protein databases using the FASTA
Blast similarity search and sequence profiling
Search for data regarding the phenotypes of mouse mutants rendered by the knockout of various genesFind information about potential associations of genes to a trait of interest.???Find information about genes related to pain phenotypes in mice.Search for single nucleotide polymorphisms (SNPs) with potential phenotypic effect.Find information about the polymorphisms associated with notable pain phenotypes.Integration of publicly available databases of human genetic variation with molecular features and clinical phenotype data.Provide large-scale lists of user-classified genes with functional profiles biologically characterizing the different gene classes in the listSearch for data regarding the phenotypes of mouse mutants rendered by the knockout of various genes.Integration of publicly available databases of human genetic variation with molecular features and clinical phenotype data.Find information about the polymorphisms associated with notable pain phenotypes.Search for single nucleotide polymorphisms (SNPs) with potential phenotypic effect.Find information about genes related to pain phenotypes in miceSelect single nucleotide polymorphisms (SNPs) with potential phenotypic effect.Find information about genes whose transcriptional levels are uniquely associated with a specific biological phenotype.Search for details of annotated probesets on Affymetrix GeneChip microarrays.Perform intelligent design of oligonucleotides for DNA microarrays.Design PCR primers for amplifying probes for cDNA arraysA light-weight multi-method clustering engine for microarray gene-expression data.Explore redefined Affymetrix microarray data.Identify co-expressed genes based on n a large Arabidopsis thaliana microarray data set.Integrates various forms of microarray data from diverse annotation and primary data sources.Predict functional associations between genes based on microarray expression data.Map and visualize microarray gene-expression data for integrated biological pathway resources using Scalable Vector Graphics (SVG)Perform comprehensive analysis of microarray data.Analyze microarray and promoter data to infer transcriptional regulatory network.Visualization, normalization and significance testing for pathogen-detection microarray data.Analyze microarray gene expression and other functional genomics-related data.Integration of functional annotation, regulatory
domains and interaction data with microarray experiments.Perform biclustering of microarray data.Analyze gene expression patterns from microarray data.Identify functions and processes regulated in microarray and SAGE experiments.Identify differentially expressed genes.Identify differentially expressed genes from two-channel microarray data.Interpret gene expression data obtained from microarray experiments.Analyze DNA microarray data.Use
domain-based regression method to analyze microarray data.Interpret microarray gene expression data.Perform cross-platform microarray analysisSearch and analyze microarray data on aging in different model organisms.Search for information and microarray expression data for genes involved in mitosis and meiosis, gamete formation and germ line development across species.Compare gene lists from different different microarray studies or other genomic expression profiling.Search for microarray data of Arabidopsis.Search for cancer gene expression microarray data.Search for expression profile data from the RIKEN mouse cDNA microarray.Search for tissue microarray data.Perform cross-platform microarray analysisSearch extensive collection of dynamic maps of classic metabolic and signal transduction pathway maps.Search and analyze metabolic pathways.Find information about chemical-protein interactions.Find information about synthetic metabolic pathways.Find information about quantitative gene interactions in yeast.Search for biological pathway and genomic information of lipid-associated disorders.Search for information on gene networks, such as metabolic pathways and signal transduction pathways.Find information about enzyme reaction pathways.Search a collection of pathway maps on metabolism, signal transduction, gene regulation, and cellular processes.Find information about metabolic pathways.Find information about metabolic pathways and networks.Search for information on chemical compounds and their reactions in biological pathways.Search information on biological pathways and enzymes in different organismsPredict relevant pathways in biochemical networks.Find information about metabolic networks.Find information about transcription pathways.Interactively explore the KEGG metabolic network.Find information about protein-protein interaction.Find information about chemical-protein interactions.Find information about protein-protein interaction of modular domains mediated by linear
domains.Search and analyze known experimentally validated protein-protein interactions dataFind information on metabolic pathways, signal transduction pathways, and gene regulatory networks in humans.Infer new potential protein (PPI) and domain (DDI) interactions.Find experimentally determined interactions between proteins.Search for computed protein-protein interactions in human.Find information about protein interaction networks.Search and analyze protein interactions.Find evidence for the detected protein interactions based on putative protein domain interactions.Find functional interactions between biological moleculesFind information about the interactions of extracellular proteins and polysaccharides.Retrieve and compare protein interaction data from difference databases.Analyzes protein interaction networks across species to infer protein complexes that are conserved in evolution.Explore interactions between and within proteins.Recognize binding sites and interfaces of protein-protein interactions.Find similar protein interaction networks between species.Find protein-protein interaction for yeast proteins.Predict protein-protein interaction sites.Find biomolecular interaction, complex and pathway information.Analyze large biological networksFind information in PubMed about gene and signal transduction pathways.Find information about DNA repair pathways in H.sapiens, E.coli and S.cerevisiae.Search for information on metabolic and regulatory pathways.Find homologous protein-protein interactions across multiple species.Detect repetitive sequence in a query DNA sequence by screening it against a collection of repeats.Find regions suspected of containing coding sequences and visualize nucleotide diversity between two genomic or gene sequences.Explore a comprehensive map of regulatory elements in the human genome.Identify and mask repeats in DNA sequences.Search DNA
domains against databases of known domains Detect internal repeats in DNA and amino acid sequences and in 3D
tertiary structures.Search for various information and analyze repeats in genomic DNA.Automated discovery, filtering and scoring of DNA sequence
domains using Bayesian approaches.Identify serial repeats (tandem repeats) in DNA sequences.
Perform secondary structure predictions on protein sequences.Search for 3D
tertiary structure and functional annotation of phosphorylation sites in proteinsInvestigate the tertiary structure of a protein of interest.Predict protein structure and function based on protein sequence.Accurately predict transmembrane helices
structure.Search for various information on membrane protein structures and topology._proteins>Predict protein structures based on consensus sequences.Identify and analyze conserved protein 3D
tertiary substructures.Predict a super secondary structural
domain, xdf-hairpins, in a protein sequence.Find information about sequence-to-structure relationships in coiled-coil protein structures.Retrieve information about protein structural similarity.Analyze protein
tertiary structures submitted by the users as the Protein Data Bank (PDB) files.Perform automated protein secondary structure assignment from PDB structures.Evaluate the accuracy of automated protein structure prediction methods.Search for
tertiary protein structure models for the whole genome of 41 species.Search for structural neighbors of proteins.Search for structural information on immune system proteins.Compare protein
tertiary structurespredict protein active site residues.Search
tertiary protein structures and identify structural domains.Search
tertiary protein fragments similar in structure to known active, binding and posttranslational modification sites.Prediction of antibody structuresPredict transmembrane protein helices.Predict protein tertiary structure, functional signatures, and resistance/susceptibility of protein mutantsSearch for
tertiary structure and functional annotation of phosphorylation sites in proteins.Find the coiled-coil regions in an amino acid sequence.Analyze similar protein tertiary substructuresPredicts the structure of protein complexes given the structures of the individual components and an approximate binding orientation.Predict and analyze structures of biomolecules and their complexes.Conduct the secondary structure assignment from atomic resolution protein structures.Predict protein structure and function based on protein sequence._proteins>
Conduct computational research in comparative and functional genomics
The missing link between multi-species full genome comparisons and functional analysis.
Compare structural and functional annotations of proteins between sequenced genomes.
Conduct genome wide functional and structural analysis.
Analyze data from functional analysis on fragmented microbial genetic material
A web tool for profiling the complex functionality of gene
Demarcate functional regions in genomic DNA sequences.
Provides functional annotation of genes
Provides functional annotation of genes by BLAST comparisons against the manually curated KEGG GENES database.
Identified functional elements in human genome.
Find concise information about the functions of all human genes.
Find information about annotated genes and protein functions.
Search for sequences and other functional annotation of RIKEN Mouse cDNA Clones
Search for functional repeat in mouse cDNAs.
Perform high throughput annotation of expressed sequence tags (ESTs).A comprehensive workflow system for EST data management and analysis.Clean and annotate expressed sequence tag (EST) sequences.Perform EST based gene expression profiling and analysis.Annotate crude EST (expressed sequence tag) specifically dedicated to comparative mapping approaches.Analyze and interpret high-throughput gene expression data from prokaryotes.Predict gene function using gene expression data.Search Expressed Sequence Tags
databaseDNA_sequences-genes_domains_andregulatory_sites->_Coding__coding_sequence_analysis__and_gene_prediction>Predict putative bacteriocin open reading frames (ORFs) in a DNA sequence.Predict and statistically evaluate predicted prokaryotic open reading frames (ORFs).Predict coding regions in prokaryotic and matured eukaryotic sequences.Predict coding sequences.Predict genes in prokaryotic, eukaryotic and viral genomic sequences.Predict genes in DNA sequencesFind open reading frames(ORF) present in a nucleotide sequence.Analyze large amounts of EST from mammalia and fungi.Search an evolving collection of human and mouse Open Reading Frame (ORF) clones Identify protein-coding regions in expressed sequence tag (EST)-derived sequences.Predict protein coding genes in short, environmental DNA sequences.Mask ESTs for repeatsIdentify full-length EST cDNAs and functionally annotate EST cDNAs.Search for annotated genetic information of expressed sequence tags (ESTs) in different eukaryotic
organisms.DNA_sequences-genes_domains_andregulatory_sites->_Coding__coding_sequence_analysis__and_gene_prediction>
Comparison of clusters between phylogenetic treesAnalyze phylogenetic treesIdentify phylogenetic
domains in protein sequencesCalculate phylogenies from protein sequences.Analyze phylogenetic profilesPerform user-friendly pipeline phylogenetic analysis of protein or DNA sequences.Visualize and analyze the phylogenetic distribution.phylogenetic databases implemented using trees from TreeBASE.Reconstructing and analysing phylogenetic relationships between molecular
sequences.creates
a distance or parsimony treePerforms phylogenetic
analysisperforming phylogenetic analysis with molecular
datacreates from it a distance-based phylogenetic
treeassemble phylogenetic trees
Alignment
of multiple DNA or protein sequences.Generate a three-dimensional representation for a given RNA or DNA sequence alignment.Compare two sequences with either local or global alignment algorithms.Conduct multiple alignments and subsequent quality evaluation.Align multiple, long genomic DNA sequencesPerform local
sequence alignment for non-coding RNA.Construct a multiple sequence alignment by incorporating biological knowledge of sequencesConduct and evaluate multiple sequence alignments for protein, DNA and RNAPerform protein nucleotide sequence alignment.Perform DNA local alignment of genomic sequences in FASTA or plain format.Perform multiple DNA or protein sequences alignments.Align multiple DNA or protein sequences.Compare two sequences with either local or global alignment algorithms.Perform high-quality multiple protein sequence alignments.Conduct protein alignment analysis, multiple sequence alignment, and comparative modeling.Detect repeated sequences in a protein sequence using HMM-HMM comparison.Computes multiple sequence alignments (MSAs) by running several MSA methods Perform multiple sequence alignment with hierarchical clustering.Identify multiple-block alignments from single block queries of protein sequence.Convert a multiple sequence alignment of proteins and the corresponding DNA (or mRNA) sequences into a codon alignment.Perform multiple protein sequence alignmentConstruct multiple protein sequence alignmentConduct and evaluate multiple sequence alignments for protein, DNA and RNA.Perform protein nucleotide sequence alignment.Compute multiple sequence alignments from partition function posterior probabilities.Perform protein structure
alignment.Multiple sequence alignment based on segment-to-segment comparisonMultiple sequence alignment using pattern discovery
A web service for analyze and annotate mass spectrometry data.Use degenerate amino acid sequence and mass data derived from mass spectroscopy experiments to search a peptide database.A tool for the interpretation of tandem mass
spectrometry data and de novo sequencing of peptides.Identify and characterize proteins using mass spectra dataFind the physico-chemical properties ( molecular
weight, polarity, hydrophobicity, etc.) of an amino acid sequence by selecting appropriate tools.Search known protein sequences with peptide mass information Protein and peptide identification/characterization from mass spectrometry MS/MS data from GeneBioSequence query and mass spectrometry MS/MS ion
searchIdentify proteins with isoelectric point (pI), molecular weight (Mw) and sequence taggenerate a list of proteins close to a given isoelectric point (pI) and molecular weight (Mw)Identify proteins with isoelectric point (pI), molecular weight (Mw), amino acid composition, sequence tag and peptide mass fingerprinting data Compute the theoretical isoelectric point (pI) and molecular weight (Mw) from a UniProt Knowledgebase entry or for a user sequence